data_handling Module

Functions for handling data.

data_handling.request

data_handling.biomart

data_handling.process

Data handling for process step.

gtexquery.data_handling.process.merge_data(gtex_path: Union[pathlib.Path, str], bm_path: Union[pathlib.Path, str], mane: pandas.core.frame.DataFrame, out_path: Union[pathlib.Path, str]) → None

Merge the data from previous pipeline queries.

Parameters

• gtex_path (Union[Path, str]) – Path to the file containing GTEx query data.

• bm_path (Union[Path, str]) – Path to the file containing BioMart query data.

• mane (pd.DataFrame) – A DataFrame containing MANE annotations.

• out_path (Union[Path, str]) – Path to the output file.